PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25695_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 159aa MW: 18009.2 Da PI: 9.9589

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25695_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.6	5e-12	21	56	1	38
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +g WT+eEd++l+ +++++G W+tI++ g Rt++ Neem_25695_f_1 21 KGLWTPEEDQKLISYIQKHGIQKWSTIPKLAG--RTGN 56 678****************************8..9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.76E-11	14	57	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-14	15	56	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.342	16	67	IPR017930	Myb domain
SMART	SM00717	8.9E-4	20	68	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-9	21	56	IPR001005	SANT/Myb domain
CDD	cd00167	2.42E-8	24	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEETKKERMK KTGILETKLR KGLWTPEEDQ KLISYIQKHG IQKWSTIPKL AGRTGNNGIE 60 NFRRFGERKG LQGNRKDIKS IKVNESATPS FQESEYTTPN SDVEGSQSSS FHPNNYQVPL 120 QTTNTASLNS AQSSPFMDAL SGIFVFEFIS QFSSFIVNH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428204.1	5e-17	calmodulin-binding transcription activator 3
TrEMBL	A0A067ERP0	5e-16	A0A067ERP0_CITSI; Uncharacterized protein
TrEMBL	A0A067EZ92	6e-16	A0A067EZ92_CITSI; Uncharacterized protein
TrEMBL	A0A067F009	6e-16	A0A067F009_CITSI; Uncharacterized protein
STRING	XP_006428204.1	2e-16	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	3e-13	myb domain protein 50