PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25847_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 516aa MW: 59611.2 Da PI: 4.5528

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25847_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	118.5	8.5e-37	129	516	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +l+ + Aea+++++ ela+ + r++e +sp g +Rl + + L ++ a+ + l+ + s+ aa+++ +++ P f+h+ Neem_25847_f_1 129 HLVKAYAEAMENQQRELAEVIARRINEKVSPVGGIQERLLYHSFQPLDKQQAE------NYLKQE-----CSEVFDAAFQAIYHMLPNGMFAHFG 212 677789*****************************************9998......222222.....24566678999********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp.....eg....ppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179 aN+aIl a + + +Hi+Dfd++ G+QW a++ ++a+++ +g + +l++T ++ +e++ ++ + eet++rL++ A + g+++ + Neem_25847_f_1 213 ANSAILAACPYDaQVLHIVDFDMGAGIQWCAMIMSIAQQQnllqqNGiilqQITLKLTSIKWKEEDnydHEWRFEETKNRLHDCAYSNGLKLIVE 307 ******994555*****************9985665422777578****98888898999**************99666 PP GRAS 180 vlvakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvks.l............sPkvvvvveqe..adh.nsesF 253 k+l++l e+ ++k+ +E la n++++l ++ +++ + e+L++ k+ l + +++ + e + n + F Neem_25847_f_1 308 E---KELQNLASEMKKTKKnregkREWLAFNCMHALPHMGRRRNRRN--VMEFLSVAKEyLqanssntntsnnNRGIITYGDGEnwNKIrNCSGF 397 5...789999888887777778889**********93333333..3556655554221111111111113347888877753333688899 PP GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 + ++++yy al++s+e ++p+ ++r+ +E ++g+ ++++ e+ + e +e + l+ +G++ +++s+++ ++ak ++r+ + Neem_25847_f_1 398 GAFYDSSMDYYQALLESMEWNFPTRLeKARMAMECLFVGPFVSSLALFEEWK-----EMKEVGDSFLTGFGLQGARFSNENLMEAKVMVREGE-C 486 99999*************9887699***********99999998.....555666899*********************99.4 PP GRAS 348 gyrveee...sgslvlgWkdrpLvsvSaWr 374 y+v e ++ +vl W++ pL+ +SaWr Neem_25847_f_1 487 LYSVRTEgvnENVMVLEWNGTPLLRISAWR 516 488885555589999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.3	101	494	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-34	129	516	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MTKSDPFQLP FHENLLLDEF INYGVDIDDF LNQRDLFFPP FTTTDDSLDT SHPNFGSFSD 60 IGIEDSPFHF NELQFRLPIN DSSLDHFEDL DSYSIMEMEE IFDLTSAILP TLNLPREDME 120 IENQLGANHL VKAYAEAMEN QQRELAEVIA RRINEKVSPV GGIQERLLYH SFQPLDKQQA 180 ENYLKQECSE VFDAAFQAIY HMLPNGMFAH FGANSAILAA CPYDAQVLHI VDFDMGAGIQ 240 WCAMIMSIAQ QQNLLQQNGI ILQQITLKLT SIKWKEEDNY DHEWRFEETK NRLHDCAYSN 300 GLKLIVEEKE LQNLASEMKK TKKNREGKRE WLAFNCMHAL PHMGRRRNRR NVMEFLSVAK 360 EYLQANSSNT NTSNNNRGII TYGDGENWNK IRNCSGFGAF YDSSMDYYQA LLESMEWNFP 420 TRLEKARMAM ECLFVGPFVS SLALFEEWKE MKEVGDSFLT GFGLQGARFS NENLMEAKVM 480 VREGECLYSV RTEGVNENVM VLEWNGTPLL RISAWR

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MTKSDPFQLP FHENLLLDEF INYGVDIDDF LNQRDLFFPP FTTTDDSLDT SHPNFGSFSD  60
IGIEDSPFHF NELQFRLPIN DSSLDHFEDL DSYSIMEMEE IFDLTSAILP TLNLPREDME  120
IENQLGANHL VKAYAEAMEN QQRELAEVIA RRINEKVSPV GGIQERLLYH SFQPLDKQQA  180
ENYLKQECSE VFDAAFQAIY HMLPNGMFAH FGANSAILAA CPYDAQVLHI VDFDMGAGIQ  240
WCAMIMSIAQ QQNLLQQNGI ILQQITLKLT SIKWKEEDNY DHEWRFEETK NRLHDCAYSN  300
GLKLIVEEKE LQNLASEMKK TKKNREGKRE WLAFNCMHAL PHMGRRRNRR NVMEFLSVAK  360
EYLQANSSNT NTSNNNRGII TYGDGENWNK IRNCSGFGAF YDSSMDYYQA LLESMEWNFP  420
TRLEKARMAM ECLFVGPFVS SLALFEEWKE MKEVGDSFLT GFGLQGARFS NENLMEAKVM  480
VREGECLYSV RTEGVNENVM VLEWNGTPLL RISAWR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481416.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A2H5MXM1	0.0	A0A2H5MXM1_CITUN; Uncharacterized protein
STRING	XP_006481416.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14344	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	6e-15	GRAS family protein