PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_25879_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 212aa MW: 24988.2 Da PI: 7.5898

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_25879_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.9	4.2e-32	12	134	8	128
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 +P+dee++ L+ k + + ++ ++i+evdiyk+eP dLp + ++ +e wyfF++ ky++++ nr t++gyWk t +d+++l+k ++++ Neem_25879_f_1 12 QPNDEEII-ALLNMKELDPDYSV-QIINEVDIYKLEPFDLPglSVIQWDELVWYFFCSPCCKYRNSQCVNRRTDEGYWKITSRDRKILAKhSTQV 104 7*****.88999999999999.89***********6336666777*********************************9966777 PP NAM 100 vglkktLvfy.kgrapkgektdWvmheyrl 128 +g+kk L+fy +g pk +ktdWvmhe++ Neem_25879_f_1 105 IGTKKYLTFYkHGYPPKEHKTDWVMHEFHS 134 9*****557999**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.817	5	152	IPR003441	NAC domain
Pfam	PF02365	1.0E-15	11	133	IPR003441	NAC domain
SuperFamily	SSF101941	1.05E-37	12	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MTLFNAVRLQ RQPNDEEIIA LLNMKELDPD YSVQIINEVD IYKLEPFDLP GLSVIQWDEL 60 VWYFFCSPCC KYRNSQCVNR RTDEGYWKIT SRDRKILAKH STQVIGTKKY LTFYKHGYPP 120 KEHKTDWVMH EFHSEYDPSY EKDFVICRIE KKTKNKSKSS TSYDGQSSID HLASNFRDQV 180 QISGHPHMTH DFGNNFAADT VSRVRMGTIY PQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	13	158	25	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	13	158	25	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	13	158	25	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	13	158	25	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-22	13	158	28	174	NAC domain-containing protein 19
3swm_B	2e-22	13	158	28	174	NAC domain-containing protein 19
3swm_C	2e-22	13	158	28	174	NAC domain-containing protein 19
3swm_D	2e-22	13	158	28	174	NAC domain-containing protein 19
3swp_A	2e-22	13	158	28	174	NAC domain-containing protein 19
3swp_B	2e-22	13	158	28	174	NAC domain-containing protein 19
3swp_C	2e-22	13	158	28	174	NAC domain-containing protein 19
3swp_D	2e-22	13	158	28	174	NAC domain-containing protein 19
4dul_A	2e-22	13	158	25	171	NAC domain-containing protein 19
4dul_B	2e-22	13	158	25	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387910.1	5e-47	NAC domain-containing protein 89-like
Refseq	XP_015387911.1	5e-47	NAC domain-containing protein 89-like
Refseq	XP_015387913.1	5e-47	NAC domain-containing protein 89-like
Refseq	XP_024042301.1	5e-47	NAC domain-containing protein 89-like
Refseq	XP_024956939.1	5e-47	NAC domain-containing protein 89-like
Refseq	XP_024956940.1	5e-47	NAC domain-containing protein 89-like
TrEMBL	A0A067DNM9	7e-46	A0A067DNM9_CITSI; Uncharacterized protein
TrEMBL	A0A067E037	5e-46	A0A067E037_CITSI; Uncharacterized protein
TrEMBL	A0A1S8ACB0	3e-47	A0A1S8ACB0_CITLI; NAC domain containing protein (Fragment)
STRING	XP_006485395.1	2e-46	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33060.1	5e-30	NAC 014