PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25937_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 252aa    MW: 28775.9 Da    PI: 9.7142
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25937_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-10117183162
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvlt 62 
                     f+k+l +sdv++ gr+v+pkkfae++   +++++++ + ++d +  + W++k+++  ++++++y+++
  Neem_25937_f_1 117 FEKQLQNSDVSSAGRIVIPKKFAETNlpILNEKGGFWMNFNDMDYpQIWTFKFRFwpNNRGRMYLFE 183
                     99**************************7778899*******6666*******99655555557765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-16114235IPR015300DNA-binding pseudobarrel domain
CDDcd100174.96E-11115243No hitNo description
SuperFamilySSF1019361.12E-12115183IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0068117213IPR003340B3 DNA binding domain
PfamPF023622.1E-7117183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVIISEFGDV VLTPGKPATG DQVNQGGGNR EPPAAGSSRN CEYRRRASRE PPAAGSSRNC  60
EYRRRASRRQ NHRFAPDNPL VFQHRLPRLP LQPPPAPPVR LYFSLQEINP FVMRFLFEKQ  120
LQNSDVSSAG RIVIPKKFAE TNLPILNEKG GFWMNFNDMD YPQIWTFKFR FWPNNRGRMY  180
LFENASGLKS PASSQSSTFL LLNAMQLICC FTENLPGEFT RKYCLELGDY LMVFKDDING  240
AYVSAIKYSC IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-251132431100B3 domain-containing transcription factor FUS3
6j9b_D3e-251132431100B3 domain-containing transcription factor FUS3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438851.29e-51uncharacterized protein LOC18043546
RefseqXP_015387151.19e-51uncharacterized protein LOC107177608
TrEMBLA0A2H5N9Q52e-52A0A2H5N9Q5_CITUN; Uncharacterized protein
STRINGXP_006438851.15e-50(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.17e-27B3 family protein