PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2634_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 630aa    MW: 70050.9 Da    PI: 4.6997
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2634_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS402.25.3e-1232275482325
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA a+s+g+ e+a+a++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++e++P++kf++++
  Neem_2634_f_1 227 KQLLIDCAAALSDGNIEEATAIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAAMQILFEICPCFKFGFMA 319
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI ea++ e+rvHiiDfdi+qG Q+++L+q++as p++ p lR+Tgv++pes+  s   l+ +g rL+k+Ae+lgvpf+f++ v ++++ +++
  Neem_2634_f_1 320 ANGAIIEAFKDEKRVHIIDFDINQGSQYITLIQTIASLPGKRPLLRLTGVDDPESVqrSVGGLQIIGLRLEKLAEALGVPFKFRA-VPSKTALVTP 414
                    ******************************************************9999999************************.799******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+++pgEal+Vn+++qlh+++desvs+ ++rd++L+lvksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpres++r++vEr
  Neem_2634_f_1 415 SMLNCRPGEALIVNFAFQLHHMPDESVSTVNQRDQLLRLVKSLNPKLVTVVEQDMNTNTAPFFPRFIEAYNYYSAVFESLDATLPRESQDRMNVER 510
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                    ++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF+
  Neem_2634_f_1 511 QCLARDIVNIVACEGEERIERYEVAGKWRARMTMAGFT 548
                    *************************************7 PP
2GRAS81.91.1e-25548630291374
           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s ++++ ++ l++++ ++ y+v+ee+g l +gW+d++L+++SaWr
  Neem_2634_f_1 548 TSDIVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSANVMDMIRKLIKQYCDR-YTVKEEKGLLHFGWEDKSLIVASAWR 630
                    679****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.088200611IPR005202Transcription factor GRAS
PfamPF035141.9E-120227548IPR005202Transcription factor GRAS
CDDcd071770.00835233310No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MSLVSSAETS ATSYGNPNLY PLKGSGDSSA SPGSGDSSAS PPQVFSSDKH KMMYMTDSYS  60
SDSYEKYILD SPTEELIHPS SSANSGDSFH RQAASSYQPR ASSSFPMAAQ DPLDSSFMSV  120
RRSCGYRSNS ESGYLQTQSP DPIEYDEDTV RLKLQELERA LLDDDEGNED DDMYATGQSM  180
ELDVEWSDQN QNVPFHDSPK ESSSSDSNLS SISSNKEESQ ISPRTPKQLL IDCAAALSDG  240
NIEEATAIIN ELRQMVSIQG DPPQRIAAYM VEGLAARMAA SGKFLYKALK CKEPPSSDRL  300
AAMQILFEIC PCFKFGFMAA NGAIIEAFKD EKRVHIIDFD INQGSQYITL IQTIASLPGK  360
RPLLRLTGVD DPESVQRSVG GLQIIGLRLE KLAEALGVPF KFRAVPSKTA LVTPSMLNCR  420
PGEALIVNFA FQLHHMPDES VSTVNQRDQL LRLVKSLNPK LVTVVEQDMN TNTAPFFPRF  480
IEAYNYYSAV FESLDATLPR ESQDRMNVER QCLARDIVNI VACEGEERIE RYEVAGKWRA  540
RMTMAGFTSD IVNIVACEGE ERIERYEVAG KWRARMTMAG FTSCPMSANV MDMIRKLIKQ  600
YCDRYTVKEE KGLLHFGWED KSLIVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-6523362926378Protein SCARECROW
5b3h_A8e-6523362925377Protein SCARECROW
5b3h_D8e-6523362925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472900.10.0scarecrow-like protein 1
RefseqXP_024952594.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2H5PI280.0A0A2H5PI28_CITUN; Uncharacterized protein
TrEMBLA0A2H5PI420.0A0A2H5PI42_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006472900.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]