PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26476_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YA

Protein Properties

Length: 210aa MW: 22764.3 Da PI: 6.3455

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26476_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	44.7	4.5e-14	176	210	1	36
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk 36 +ep+YVNaKQy +Il+RRq+Rak+e kkl +k rk Neem_26476_f_1 176 QEPVYVNAKQYMGILRRRQARAKAELAKKL-IKVRK 210 69***************************9.88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	0.01	174	210	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	19.631	175	210	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.6E-10	177	210	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	180	200	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MRSKSESSNQ LEPDPHSGPP TTVYSEQPWW RGVGYNSISP AVVGANVSNS SSLECPNGSE 60 SNDDQSMSNG GLNEECGDAN KEAQATASSR SVGNCGQDNQ NVQQGGASAM PTMHEECFTQ 120 PPQLELVGHS IACASNPYQD PYYGGMMATY GHQPLGYPQF VGMPHARMPL PLEMAQEPVY 180 VNAKQYMGIL RRRQARAKAE LAKKLIKVRK

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446125.1	1e-128	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446126.1	1e-128	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446127.1	1e-128	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006446128.1	1e-128	nuclear transcription factor Y subunit A-1 isoform X1
Refseq	XP_006470619.1	1e-128	nuclear transcription factor Y subunit A-1
Refseq	XP_006470620.1	1e-128	nuclear transcription factor Y subunit A-1
Refseq	XP_006470621.1	1e-128	nuclear transcription factor Y subunit A-1
Refseq	XP_006470622.1	1e-128	nuclear transcription factor Y subunit A-1
Swissprot	Q9LXV5	6e-63	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A067F572	1e-126	A0A067F572_CITSI; Uncharacterized protein
TrEMBL	V4U5J8	1e-126	V4U5J8_9ROSI; Uncharacterized protein
STRING	XP_006470619.1	1e-127	(Citrus sinensis)
STRING	XP_006446125.1	1e-127	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5946	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	1e-61	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]