PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26629_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 219aa MW: 23715.7 Da PI: 9.5369

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26629_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.5e-13	105	148	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L llP++ +K +K++i+ +Av YIk Lq Neem_26629_f_1 105 TERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVSYIKTLQ 148 6*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-16	96	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.872	97	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-10	102	144	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.7E-15	102	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	105	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-9	105	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSEEGEGAGG GGNESFLWEK RSWALSISDN SGGVSEDGIL LRKNPAPPMP PSNSNSPKVL 60 MDEGAALSKK RGRGNGGVGK DNGNLKRSGE VKETGDSEHE IHMWTERERR KKMRNMFANL 120 HALLPQLPPK ADKSTIVDEA VSYIKTLQQT LQKLQKQKLE RLQGVPIFGF EPSVITPQKL 180 AAFNSSSREA FLADQIQGSF ANLVGAVDAT NQLQGGIFG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023922279.1	1e-63	transcription factor bHLH95
TrEMBL	A0A2N9IAL9	6e-66	A0A2N9IAL9_FAGSY; Uncharacterized protein
STRING	VIT_03s0063g00170.t01	1e-60	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	6e-26	bHLH family protein