PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26784_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Protein Properties

Length: 188aa MW: 21128.4 Da PI: 8.7212

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26784_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.1	5.8e-17	93	173	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ++ps+v+ +l lpkkf+++h k +++ + lede+g ++e ++ + + l++GW++F ++L egD++vF+l++ Neem_26784_f_1 93 FIKCMLPSHVSGGFWLGLPKKFCTDHLPK--KDTIIALEDENGHEYETNY--LAEK--IGLSGGWRGFSMVHKLVEGDVLVFHLIRP 173 89**********************533..5679***********..4444..44*********************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-19	87	176	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-21	88	176	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.97E-25	91	172	No hit	No description
Pfam	PF02362	5.1E-15	93	173	IPR003340	B3 DNA binding domain
SMART	SM01019	4.5E-18	93	179	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.533	93	188	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA 60 TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP 120 KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKKKK 180 KAEALVIE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024035070.1	7e-75	B3 domain-containing protein Os01g0234100 isoform X2
TrEMBL	A0A2H5MX91	8e-67	A0A2H5MX91_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006423042.1	7e-65	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16718	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-40	B3 family protein