PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26814_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YA

Protein Properties

Length: 211aa MW: 23580.4 Da PI: 10.1594

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26814_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89	6.7e-28	9	82	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk.................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e ekk + + kpylheSRh hA+rR+Rg+gGrF Neem_26814_f_1 9 EEPVYVNAKQYHGILRRRQLRAKAELEKKlikvrkliaiavvaftnI-HVVLKPYLHESRHLHAMRRARGCGGRF 82 69***************************************9864.6678********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.5E-30	7	85	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.939	8	85	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.2E-26	10	82	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	13	33	IPR018362	CCAAT-binding factor, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MALPLEMAEE PVYVNAKQYH GILRRRQLRA KAELEKKLIK VRKLIAIAVV AFTNIHVVLK 60 PYLHESRHLH AMRRARGCGG RFLNTKKLDI QASNAMSNHD TSSSVPSTQA PNSSSSESAA 120 THYSRSSDSS TAHREATDPQ VQPEQRGSSG NGKTYHDDNG NSNGFYLDRQ GFQLFKYHPL 180 SDNLVEEGDF SGQQSERIVA NRAQHRALTI K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-17	9	89	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024044827.1	9e-93	nuclear transcription factor Y subunit A-1 isoform X2
Swissprot	Q945M9	7e-30	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A2H5QAW5	6e-91	A0A2H5QAW5_CITUN; Uncharacterized protein
STRING	XP_006489920.1	5e-89	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15602	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	3e-30	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]