PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26893_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 166aa    MW: 18696.2 Da    PI: 11.0018
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26893_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-086381547
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +v++ G+g+W+ I+r + k+Rt+ q+ s+ qky
   Neem_26893_f_1  6 LVQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 38
                     79******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.031143IPR017930Myb domain
CDDcd001674.54E-4439No hitNo description
Gene3DG3DSA:1.10.10.605.8E-6538IPR009057Homeodomain-like
PfamPF002492.0E-5638IPR001005SANT/Myb domain
SuperFamilySSF466896.93E-8741IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-9741IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MCGILLVQKV GKGDWRGISR NFVKTRTPTQ VASHAQKYFL RRFNQNRRRR RSSLFDITTD  60
TFMGSSMEED QAHQETVTLP LPQLQQQQQQ QQQLSRNLGG FPVSTYPLKL APAVLPVTGS  120
NSMENLTVGP IKQQRTSPKL VRPTANIPEA RSSDTDYSCS SIFKNG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438524.17e-65transcription factor MYB1R1 isoform X2
TrEMBLA0A2H5N8F02e-64A0A2H5N8F0_CITUN; Uncharacterized protein
STRINGXP_006438522.15e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97912636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.29e-23MYB_related family protein