PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_26948_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 247aa MW: 27191.4 Da PI: 6.6722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_26948_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Neem_26948_f_3 95 FSCNYCRRKFYSSQALGGHQNAH 117 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.99E-6	93	123	No hit	No description
PROSITE profile	PS50157	11.385	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MLQANCNFES ENDSEASSQV ASNISAQEAS PDRTKDTNSS CLTNIVKLNP DQGPLSLDLT 60 LQFKSNDIES KGTGESSGEV AAAAQTPAAT IPRVFSCNYC RRKFYSSQAL GGHQNAHKRE 120 RTMAKRAMRM GIFSDRYTSL ASLPLHGSAF RSLGIKAHAA VHQGIIQQQR PPDMRRVARF 180 EQGYFGMPMF VEDDDVDLFW PGSFRQIGEE VRSNPALQLA ENSNMNFVAM PPEPRTDSSA 240 PDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006448103.1	1e-151	zinc finger protein 4
Refseq	XP_006448107.1	1e-151	zinc finger protein 4
Refseq	XP_006469288.1	1e-151	zinc finger protein 4
Refseq	XP_006469289.1	1e-151	zinc finger protein 4
Refseq	XP_006469290.1	1e-151	zinc finger protein 4
Refseq	XP_006469293.1	1e-151	zinc finger protein 4
Refseq	XP_006469294.1	1e-151	zinc finger protein 4
Refseq	XP_015382847.1	1e-151	zinc finger protein 4
Refseq	XP_024047894.1	1e-151	zinc finger protein 4
Refseq	XP_024951013.1	1e-151	zinc finger protein 4
Refseq	XP_024951014.1	1e-151	zinc finger protein 4
Refseq	XP_024951015.1	1e-151	zinc finger protein 4
Refseq	XP_024951016.1	1e-151	zinc finger protein 4
Refseq	XP_024951017.1	1e-151	zinc finger protein 4
Refseq	XP_024951018.1	1e-151	zinc finger protein 4
Refseq	XP_024951019.1	1e-151	zinc finger protein 4
Refseq	XP_024951020.1	1e-151	zinc finger protein 4
Refseq	XP_024951021.1	1e-151	zinc finger protein 4
Refseq	XP_024951022.1	1e-151	zinc finger protein 4
Refseq	XP_024951023.1	1e-151	zinc finger protein 4
Swissprot	Q39263	1e-49	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A067F403	1e-150	A0A067F403_CITSI; Uncharacterized protein
TrEMBL	V4UB17	1e-150	V4UB17_9ROSI; Uncharacterized protein
STRING	XP_006469288.1	1e-150	(Citrus sinensis)
STRING	XP_006448099.1	1e-150	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6672	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	7e-52	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]