PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26988_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 136aa    MW: 14697.9 Da    PI: 3.9452
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26988_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.81.1e-111241235
            GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                    +Rrgp g++tLCnaCGl+++ kg+
  Neem_26988_f_1  1 MRRGPAGPRTLCNACGLMWANKGT 24
                    5********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.7E-10129IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.86E-11131No hitNo description
SuperFamilySSF577161.43E-6133No hitNo description
PfamPF003201.6E-9124IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRRGPAGPRT LCNACGLMWA NKGTLRDLSK GGRNLSMDQI EPETPMDVKP SIMEGEFSGN  60
HDEHGTPEDP SKAVDEGSNN PSIDPDEEDM HGTAEDLTHS LPMGLVHSSA DDDEQEPLVE  120
LANPSDTDID IPSNFD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006433794.11e-86GATA transcription factor 24 isoform X1
RefseqXP_006472433.11e-86GATA transcription factor 24-like isoform X1
RefseqXP_024039692.11e-86GATA transcription factor 24 isoform X1
RefseqXP_024039693.11e-86GATA transcription factor 24 isoform X1
RefseqXP_024952243.11e-86GATA transcription factor 24-like isoform X1
TrEMBLA0A067GNE43e-85A0A067GNE4_CITSI; Uncharacterized protein
TrEMBLA0A2H5P7292e-82A0A2H5P729_CITUN; Uncharacterized protein
TrEMBLA0A2H5P7T01e-82A0A2H5P7T0_CITUN; Uncharacterized protein
TrEMBLV4V5083e-85V4V508_9ROSI; Uncharacterized protein
STRINGXP_006433794.15e-86(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.36e-16GATA-type zinc finger protein with TIFY domain