PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27032_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YB
Protein Properties Length: 145aa    MW: 15977.9 Da    PI: 8.1833
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27032_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.12.5e-481821798
           NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegekk 98
                    mkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plk+yl++yre+eg++k
  Neem_27032_f_1  1 MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 82
                    9******************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.6E-21155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.38E-331115IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.8E-44195IPR009072Histone-fold
PRINTSPR006151.0E-201937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.0E-203856No hitNo description
PRINTSPR006151.0E-205775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKKALPANGK IAKDAKETVQ ECVSEFISFI TSEASDKCQR EKRKTINGDD LLWAMATLGF  60
EDYIDPLKIY LTRYREMEGD TKGSAKGGDA SSKKDVQPSS NPQLAHQGSF SQGVNYGNSQ  120
NIYNRIEDAA SSAVRPVVIP NWKSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-381761893NF-YB
4awl_B5e-381761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-381761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182751e-42JQ918275.1 Medicago truncatula nuclear transcription factor Y subunit B2 (NF-YB2) mRNA, complete cds.
GenBankKJ0000831e-42KJ000083.1 Medicago sativa nuclear factor Y subunit B isoform 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289354.12e-81nuclear transcription factor Y subunit B-8 isoform X1
SwissprotQ67XJ23e-67NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A061ESY07e-79A0A061ESY0_THECC; Nuclear transcription factor Y subunit B-10 isoform 1
TrEMBLA0A2P5D7G02e-79A0A2P5D7G0_PARAD; Nuclear transcription factor Y subunit B
TrEMBLA0A2P5FUZ02e-79A0A2P5FUZ0_TREOI; Nuclear transcription factor Y subunit B
STRINGEOY077381e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-69nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]