PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27088_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 309aa    MW: 34794.7 Da    PI: 5.5143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27088_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.31.4e-1050126672
             NAM   6 rFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgk 72 
                      F P++e+l ++yL++k + ++    l   + ike+d+y++eP +Lp+       +++++++wy +sk + k++++ 
  Neem_27088_f_1  50 GFYPSEEQLFHHYLTNKNTITEeessLCGYDLIKELDLYQYEPYELPEracyayGCRGRRRHWYCYSKVRVKKESKL 126
                     59**************9776664455333468**************954666554445778******9998887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-61241IPR003441NAC domain
PROSITE profilePS5100510.48619181IPR003441NAC domain
PfamPF023652.0E-450137IPR003441NAC domain
SuperFamilySSF1019415.89E-1650181IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEDSGSNSNS NNKTASFSLP PGCRFYPSEE QLFHHYLTNK NTITEEESSG FYPSEEQLFH  60
HYLTNKNTIT EEESSLCGYD LIKELDLYQY EPYELPERAC YAYGCRGRRR HWYCYSKVRV  120
KKESKLRTDW FMHEYALVDH VKVNFCVHAK LLHGSGLLSK FVGDKDDLQN ASFVLCRVFI  180
KSHRGNSISE VGLSSGAEES VSAVRHIGIQ HDGILKADIV EAKVHDDNSF NRRNDTLRYL  240
VGLVGQPDDH SLSGPGSDAD FHFPTGIPPS EQISASGLTG AGMFSDAVVA RQLLSVLEED  300
FIELNDLVP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040257.16e-78NAC domain-containing protein 96
STRINGXP_006473295.11e-75(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-09NAC domain containing protein 25