PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2718_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 253aa    MW: 29472.8 Da    PI: 8.7835
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2718_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM873.4e-27131572128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya.tgkrknra................. 77 
                    p+G+ F+Ptd+e+v+++Lk+k+ g++l++ ++i+++d+y+  P +Lp     +++++ewyf+++r + +  t++   r                  
  Neem_2718_f_2  13 PVGYIFRPTDSEIVCYFLKNKILGQHLPA-NFIPTIDVYSKSPDQLPfYdFRHGRDNEWYFYTTRPNCKLaTDDDDFRHgrdnewyfyttrpnckl 107
                    89***************************.99***************6433345788******998755425554444344578899999999999 PP

            NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     t++gy + +  +k++++ ++++vg  ++L++y+gr pkg++t+W++ eyr+
  Neem_2718_f_2 108 aTDDGYYSVS-MEKNIFK-DNRVVGFLQILTYYQGRPPKGRRTNWIIYEYRV 157
                    999**99866.5699999.899****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-19579IPR003441NAC domain
PROSITE profilePS5100531.69612186IPR003441NAC domain
PfamPF023654.5E-1513157IPR003441NAC domain
SuperFamilySSF1019418.37E-1690185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESSVKKESA KIPVGYIFRP TDSEIVCYFL KNKILGQHLP ANFIPTIDVY SKSPDQLPFY  60
DFRHGRDNEW YFYTTRPNCK LATDDDDFRH GRDNEWYFYT TRPNCKLATD DGYYSVSMEK  120
NIFKDNRVVG FLQILTYYQG RPPKGRRTNW IIYEYRVNPD VIPVCELHNP IRAEMKNFVM  180
CKVVLTEQRD SGFPTLKHDA AVAGSLEPFS QLKFMGCGFL LPTEIAKRVS CKQFMHKVLT  240
SSSMNRKDIV HVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-171215715140Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17601710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.15e-25NAC domain containing protein 57