PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_27647_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 686aa MW: 77041.7 Da PI: 5.747

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_27647_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.7	2.7e-24	230	280	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l dl +yF+lpi++AA+++++c+Tv+K+iCR+ G+ RWPhRkiks+ Neem_27647_f_1 230 TGKLTLRDLVNYFHLPIEQAARKMQLCPTVVKKICRRDGLLRWPHRKIKSI 280 5689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	218	300	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-20	232	280	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
FADLSLFEES SLPPSSSNAH TDDIITDTND PFDDPLLWDF GNNINGGSSQ AGPSENHAET 60 SNGGRPEIET CADMKGFPVW PVAPVPYLCS CCLVLREIIH TNGHDTTKLE IHGRLGIICH 120 AVLEFRQSAS DVQYHMIDFC KKSIESVKEY LIQYCQERKQ AGFFMLPDPL SVFYEAVCVG 180 LDLDENLSTE DISQSTRANS GTNEMHQPDM EIDSGKTQKT SLAAQVRERT GKLTLRDLVN 240 YFHLPIEQAA RKMQLCPTVV KKICRRDGLL RWPHRKIKSI ERRMSMMSAR LSSSDPEERA 300 VAQREIHKLR EEMVAGVKQE ASEEWDESMP LPGDIIEGFS ETNDADEFFV PAKAKSELST 360 QLGKINQQVE TIWLKIRRGD SIVKLRVRVV QQRGSMLQRK YTIKAARDDR HVAILGDLTF 420 EQCTELQEMS RKVVNVNCRG FSKRGVKYDW KMKVATYLPD QRSPVVSSIL FPPLQVEYSL 480 EATTARCMSW FSAAVSSGVP LVFVNIQTEQ ILTSERTNFP GRELTWGRQQ NHATTMQIVQ 540 GIRLWFLPGV AEVLLEMTPE PGEARFGMDI KQTEEGFIFV YSVARGSAAD RAGMRHLYEE 600 ANATGYLLVI SRLEGKSVMP SGGSCEGLLH CCDHNELRET LTSAIDQMEG IQLHIMVWPS 660 QTRPAITPAT AETLLPPIST HSQPPL

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

FADLSLFEES SLPPSSSNAH TDDIITDTND PFDDPLLWDF GNNINGGSSQ AGPSENHAET  60
SNGGRPEIET CADMKGFPVW PVAPVPYLCS CCLVLREIIH TNGHDTTKLE IHGRLGIICH  120
AVLEFRQSAS DVQYHMIDFC KKSIESVKEY LIQYCQERKQ AGFFMLPDPL SVFYEAVCVG  180
LDLDENLSTE DISQSTRANS GTNEMHQPDM EIDSGKTQKT SLAAQVRERT GKLTLRDLVN  240
YFHLPIEQAA RKMQLCPTVV KKICRRDGLL RWPHRKIKSI ERRMSMMSAR LSSSDPEERA  300
VAQREIHKLR EEMVAGVKQE ASEEWDESMP LPGDIIEGFS ETNDADEFFV PAKAKSELST  360
QLGKINQQVE TIWLKIRRGD SIVKLRVRVV QQRGSMLQRK YTIKAARDDR HVAILGDLTF  420
EQCTELQEMS RKVVNVNCRG FSKRGVKYDW KMKVATYLPD QRSPVVSSIL FPPLQVEYSL  480
EATTARCMSW FSAAVSSGVP LVFVNIQTEQ ILTSERTNFP GRELTWGRQQ NHATTMQIVQ  540
GIRLWFLPGV AEVLLEMTPE PGEARFGMDI KQTEEGFIFV YSVARGSAAD RAGMRHLYEE  600
ANATGYLLVI SRLEGKSVMP SGGSCEGLLH CCDHNELRET LTSAIDQMEG IQLHIMVWPS  660
QTRPAITPAT AETLLPPIST HSQPPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953682.1	0.0	uncharacterized protein LOC102610568
TrEMBL	A0A2N9J811	0.0	A0A2N9J811_FAGSY; Uncharacterized protein
STRING	XP_006453028.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-11	RWP-RK domain-containing protein