PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2766_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRF
Protein Properties Length: 197aa    MW: 21860.7 Da    PI: 9.5745
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2766_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.11.6e-2370114145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCs+++ +g+k+CErH++r+r rsrk++e+
  Neem_2766_f_3  70 DPEPGRCRRTDGKKWRCSKDAHPGSKYCERHMNRSRYRSRKPVES 114
                    79****************************************986 PP
2QLQ52.71.3e-181650236
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                   +FT +Q+++L++Q+l++KyL a++ vPp+Ll++i+
  Neem_2766_f_3 16 PFTVSQWHELEHQALIFKYLKAGLSVPPDLLVPIR 50
                   9********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-91551IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.9E-141650IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.7361651IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.94170114IPR014977WRC domain
PfamPF088794.9E-2071113IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSGSGSFYSS VGQPPPFTVS QWHELEHQAL IFKYLKAGLS VPPDLLVPIR TSLHLLSSLG  60
YCSYYGKKVD PEPGRCRRTD GKKWRCSKDA HPGSKYCERH MNRSRYRSRK PVESQTASQP  120
LSTAASDVGT GSSSGSRSFQ NPPLQSISNH EGLCFPSKVS QSLLDPTPYG ISNREYSDMS  180
RSRFCFLVGV PWCPHAI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897345.11e-79growth-regulating factor 4-like isoform X2
RefseqXP_015901326.11e-79growth-regulating factor 4-like isoform X2
RefseqXP_024923241.13e-79growth-regulating factor 4-like isoform X1
RefseqXP_024934743.13e-79growth-regulating factor 4-like isoform X1
SwissprotQ6AWY61e-47GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A067DB459e-77A0A067DB45_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4T8F01e-76V4T8F0_9ROSI; Uncharacterized protein
STRINGXP_006493631.12e-77(Citrus sinensis)
STRINGXP_006432586.12e-77(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143391019
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-40growth-regulating factor 2