PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_27763_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 247aa MW: 28300.7 Da PI: 5.2329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_27763_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.3e-05	145	185	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR +iN+++ L++++P + k + a +L + ++Y++sLq Neem_27763_f_1 145 VRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 185 6****************9....35599999********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.515	134	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	139	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-12	145	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.14E-6	146	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MADFTEDFRP SFPFLYIDPN MEQHQFSVLD NASLNYQSFL PFSNDNFFSH QQPEFPGDLA 60 ENFPGVFQQS NINYQNMLPV SQSTVTIESE NKKRKAVEIS ETSCENSSSP VCEIETKRKN 120 NSGGRRKRVK GNEKEEEKPK EVVHVRRGKI NERLRCLQDI VPGCYKTMGM AVMLDEIINY 180 VQSLQNQVEF LSMKLTAASR FYDFNSESDA IETMQRAKAY EAKDTERLMR EGYGGIGSCS 240 SSLTRPF

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485801.1	1e-102	transcription factor BEE 3
Swissprot	Q8GWK7	7e-51	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A067EQR4	1e-101	A0A067EQR4_CITSI; Uncharacterized protein
STRING	XP_006485801.1	1e-102	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	3e-47	BR enhanced expression 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]