PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27801_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Whirly
Protein Properties Length: 163aa    MW: 17655.3 Da    PI: 10.2239
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27801_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly195.57.7e-61241601137
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     svyk+kaa++v++v+ptf++ dsg lk+kr+G +ll++ +a++erky+Wek+q+fals+tev++l+ +++++s+effhdp++ +sn+G+vrk+l+
  Neem_27801_f_1  24 SVYKGKAAFSVDPVLPTFTKTDSGFLKVKRKGVILLTFWPAIGERKYNWEKRQNFALSPTEVGSLITMGPNDSSEFFHDPGMLSSNAGQVRKSLS 118
                     79********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     ++ l+dG G+f++l+v+ns++k+ e+++vPv+ aefav++++
  Neem_27801_f_1 119 IKALADGNGYFISLNVSNSILKTSERLVVPVTAAEFAVMKTA 160
                     ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.3E-6412162IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.8E-5417162IPR009044ssDNA-binding transcriptional regulator
PfamPF085369.0E-5825159IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MSQAGMSTTS QDVSAKSRVF APYSVYKGKA AFSVDPVLPT FTKTDSGFLK VKRKGVILLT  60
FWPAIGERKY NWEKRQNFAL SPTEVGSLIT MGPNDSSEFF HDPGMLSSNA GQVRKSLSIK  120
ALADGNGYFI SLNVSNSILK TSERLVVPVT AAEFAVMKTA CSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-761816210154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-761816210154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-761816210154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-761816210154Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006478304.15e-90single-stranded DNA-binding protein WHY2, mitochondrial isoform X1
SwissprotD9J0341e-76WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A067E8754e-90A0A067E875_CITSI; Uncharacterized protein
TrEMBLA0A067E8I37e-90A0A067E8I3_CITSI; Uncharacterized protein
STRINGXP_006478304.12e-89(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-77WHIRLY 2