PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27894_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 191aa    MW: 22854.4 Da    PI: 4.5107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27894_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM52.61.5e-16494195
             NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                    +p GfrF+Ptdeel+ e L +kv+g+++++  + i ++d+y+++P ++   ++++ +++e ++++ +++ +      + +  +g W+atg+ k++++
  Neem_27894_f_1  4 MPTGFRFNPTDEELL-ELLDRKVSGQDMHFYGHfILQTDLYNLDPDNFLwdQNLTLSNNERFYYCLKENDS------REVLGHGWWRATGRVKKIHE 93
                    699************.99*********9998877*************964357777899*******98753......448899***********987 PP

             NAM 95 k 95
                     
  Neem_27894_f_1 94 W 94
                    4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-172102IPR003441NAC domain
PROSITE profilePS5100513.3314159IPR003441NAC domain
PfamPF023651.2E-7591IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMMMPTGFRF NPTDEELLEL LDRKVSGQDM HFYGHFILQT DLYNLDPDNF LWDQNLTLSN  60
NERFYYCLKE NDSREVLGHG WWRATGRVKK IHEWRLCRIK YKGKRSVQEE VVQNTSFPTL  120
AEQQQPPQSC QPISEANYFH FPGGESQNNQ QDFLQMEADF SYPCYDHFED DQLQQYADSP  180
EQLFPSIWSW Q
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950105.13e-44NAC domain-containing protein 83-like
STRINGXP_006495018.14e-41(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.18e-11NAC domain containing protein 3