PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2814_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 214aa MW: 23393.4 Da PI: 6.2721

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2814_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.6	1.6e-06	180	205	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri +++ +L+el+P+ + Neem_2814_f_2 180 SIAERVRRTRISDRIRKLQELVPNmD 205 689********************844 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.537	174	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-6	177	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.59E-4	178	206	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.1E-6	179	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGPQIGVCVY APHITYGGGG GGGGGELNRA GLARFRSAPA TWLEALLEEE EEDPLKPNQC 60 LTQLLSSGDP GLSQLDQVGF PRQNSSPADS LDGYFPNYGI PPSYDYLAPN IDVSPSNKRA 120 REDNMQFPSP KFHTESKGEQ SGQLPSAVSN LGDVDMEKLL EDSVPCRVRA KRGCATHPRS 180 IAERVRRTRI SDRIRKLQEL VPNMDKLIKI CMLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473253.1	2e-89	transcription factor bHLH80 isoform X2
Refseq	XP_024952054.1	2e-89	transcription factor bHLH81 isoform X1
Refseq	XP_024952055.1	6e-90	transcription factor bHLH81 isoform X3
Swissprot	Q9C8P8	1e-61	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A067GWL3	2e-88	A0A067GWL3_CITSI; Uncharacterized protein
TrEMBL	A0A067GZ94	5e-88	A0A067GZ94_CITSI; Uncharacterized protein
TrEMBL	A0A067H8E8	4e-88	A0A067H8E8_CITSI; Uncharacterized protein
TrEMBL	A0A067H8S8	5e-88	A0A067H8S8_CITSI; Uncharacterized protein
STRING	XP_006473253.1	7e-89	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5104	25	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09180.1	2e-53	bHLH family protein