PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28233_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 152aa MW: 17303.8 Da PI: 8.7523

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28233_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F + n++rHir+H Neem_28233_f_1 77 KCDKCSREFCSTINYRRHIRVH 98 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.284	76	103	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	78	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPVTKLKSSN VTDVVKAEDG NDSLDTFIKQ AIGKEPLLSF SRNGDSSVQW IQLLQALDQQ 60 ELPGWPLLTP LKVQMQKCDK CSREFCSTIN YRRHIRVHHR LKKLDKDSTK NRDLLGAFWD 120 KLSVDEAKEV VSFKNAALEQ DACICGKYAR HS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021892219.1	3e-81	uncharacterized protein LOC110810369
TrEMBL	A0A1U8NJH3	1e-77	A0A1U8NJH3_GOSHI; uncharacterized protein LOC107948966 isoform X3
STRING	evm.model.supercontig_107.76	1e-80	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	4e-49	C2H2-like zinc finger protein