PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28239_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 158aa    MW: 18175.7 Da    PI: 9.6434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28239_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-09243748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     eEd++l+++++ +G + W+ I++ +g  R++ +c  rw ++l
   Neem_28239_f_1  2 EEDDRLIKYIQTHGARGWRNIPKAIGVCRSPASCHGRWINHL 43
                     9*************************99***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.942147IPR017930Myb domain
SMARTSM007170.11145IPR001005SANT/Myb domain
CDDcd001675.45E-6243No hitNo description
SuperFamilySSF466893.02E-16284IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-18250IPR009057Homeodomain-like
PfamPF139216.1E-15259No hitNo description
PROSITE profilePS500904.2174485IPR017877Myb-like domain
SMARTSM007175.84890IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-85191IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
NEEDDRLIKY IQTHGARGWR NIPKAIGVCR SPASCHGRWI NHLRPNINHS KITQEEEQKI  60
IKIYNAVGTR CLPNRSACHI RNYWRSTIMK KYGNGEIDRY AIDINKPKVL NRDNGEVLKI  120
EEVNKGGGTS TRQMNMYIDE ELDLELRIGP LGQHGAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.16e-20myb domain protein 7