PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28524_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 640aa    MW: 71500.5 Da    PI: 6.8051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28524_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96e-14305355154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     s y+GV++++  ++W A++        +  k ++lg+f+++eeAaka++ a+ + +
  Neem_28524_f_2 305 SIYRGVSRNPAYNKWQARLGKS-----KdtKGIYLGTFDSEEEAAKAYDVAAIRVK 355
                     57****************6663.....235*********************99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.34192270IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-8192271IPR001471AP2/ERF domain
SMARTSM003801.3E-5192276IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-8216272IPR016177DNA-binding domain
PfamPF008471.8E-9305356IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16305365IPR016177DNA-binding domain
CDDcd000181.24E-17305365No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15306364IPR001471AP2/ERF domain
SMARTSM003804.8E-19306370IPR001471AP2/ERF domain
PROSITE profilePS5103217.227306364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MEVKKKSDEK FSAPKSTLSS AATSPANHAS QSQSSNLGFS ISHTDHDQNQ NQLVPHCSPE  60
AHEGIINSTI NFSELHQVFL SGNSLQHETT PQKSQGSLQV QYYSSPETTA YSILPIQSVE  120
QRDSTVNGEI SGEIKSSMIT VKEKNREPST KRKHPEETSL NVVNGEINNG GNGKDTGQPL  180
GHEQIFWERT SKYRGVSRSS EVHKFELSIA KKSFLHWRGN IERYETFLWD NSDPQAKPKT  240
GGFANEETAA RAYDLAALKL WGVSAQINFP LSEYEKDLEE MKNMTKKEYL LTLRRKSKGF  300
SKGVSIYRGV SRNPAYNKWQ ARLGKSKDTK GIYLGTFDSE EEAAKAYDVA AIRVKGLEAI  360
TNFNIREYDV KSILQSLKLP IGKEDDVKSI LQSLKLPIGK GASKFLKENS VNDVLVKKRK  420
TGKLPILHLQ VNSDGVEHNP NSVTGHVHKN PNPSADAHLL EHSQDLAARE NQKYNKHVLH  480
EFPSHSLIKA YETPSSSLLQ AHQNGFQTIS TEDGCALQID KDLSGQIMEG VSSDGIFEDF  540
MGEKDTDQDL VFDFLQENFL PQLSPHNEQF LFYLNDSNKH QNPHQNLDFQ SNPSLRGGLS  600
TDTISGIDLW ENPKCTYGEE FLSSKILKGE SERNSNGSSK
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.19e-64AP2 family protein