PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28598_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 472aa MW: 52720.1 Da PI: 9.1046

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28598_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.3e-08	345	392	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d++ q+G g W+ I r + +Rt+ +++++w+++l Neem_28598_f_1 345 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssAHRTPIDLRDKWRNLL 392 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.675	337	396	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.5E-11	338	399	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-8	341	394	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.42E-15	343	402	IPR009057	Homeodomain-like
CDD	cd11660	1.19E-17	343	393	No hit	No description
Pfam	PF13921	6.2E-7	345	406	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSNPILETSL YLENRVVANK LCSLLCIRGG LDSYNAQGED DLKLEVLDGL LDDVDEVDDF 60 YAATDLSTAY IEFAEKVTEL DCVPVEGSHL GNSSSESHSP GFSGSNVAVG ISDSSTAPES 120 ECKDDSPEKM VTCELHSTEC QIPVDKKSPS TDDVNNFDEL DNDDNVLLSS ILSKCKKRVK 180 GSVLGTKVKR LRKPTQRYIE ESSDLKSGYL LRGQKISPAT LKDKHQKVKS QDESFSGSRQ 240 APAESWLRGG RLKKSSPMLH SVMSLLLLSA CWQGSRRFPL ILLHHSVMSL LLLSACWQGS 300 RRFPLILLHG FDSNDDISSS DSDDDHVRKR KSKVDVDRRK HQRMWTLSEV MKLIDGISQF 360 GVGKWTDIKR LLFSSSAHRT PIDLRDKWRN LLRASCAQKK TKGEVEQKHA MRTLPKPVLC 420 RIRELATIHP YPRVPNLKIS GNGNVVSLKQ SAKAKGVPFI SHGRNIRRKK HT

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSNPILETSL YLENRVVANK LCSLLCIRGG LDSYNAQGED DLKLEVLDGL LDDVDEVDDF  60
YAATDLSTAY IEFAEKVTEL DCVPVEGSHL GNSSSESHSP GFSGSNVAVG ISDSSTAPES  120
ECKDDSPEKM VTCELHSTEC QIPVDKKSPS TDDVNNFDEL DNDDNVLLSS ILSKCKKRVK  180
GSVLGTKVKR LRKPTQRYIE ESSDLKSGYL LRGQKISPAT LKDKHQKVKS QDESFSGSRQ  240
APAESWLRGG RLKKSSPMLH SVMSLLLLSA CWQGSRRFPL ILLHHSVMSL LLLSACWQGS  300
RRFPLILLHG FDSNDDISSS DSDDDHVRKR KSKVDVDRRK HQRMWTLSEV MKLIDGISQF  360
GVGKWTDIKR LLFSSSAHRT PIDLRDKWRN LLRASCAQKK TKGEVEQKHA MRTLPKPVLC  420
RIRELATIHP YPRVPNLKIS GNGNVVSLKQ SAKAKGVPFI SHGRNIRRKK HT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006428745.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006428746.1	0.0	uncharacterized protein LOC18039657 isoform X2
Refseq	XP_006481484.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_006481485.1	0.0	uncharacterized protein LOC102617973 isoform X2
Refseq	XP_006481487.1	0.0	uncharacterized protein LOC102617973 isoform X4
TrEMBL	A0A2H5Q8D6	0.0	A0A2H5Q8D6_CITUN; Uncharacterized protein
STRING	XP_006481484.1	0.0	(Citrus sinensis)
STRING	XP_006428745.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9200	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	5e-24	TRF-like 6