PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28659_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C3H

Protein Properties

Length: 153aa MW: 17350.3 Da PI: 7.2727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28659_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.5	9.5e-08	103	125	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+f++rtG Ck+G CkF+H+ Neem_28659_f_3 103 EDCSFYLRTGCCKFGFYCKFNHP 125 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.07	99	127	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.32E-5	103	126	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-5	103	125	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MCGRKIQREL GQKSPPGPRS FGKMVDVWEK NTTGTWAEES SWSPKRDKTQ FSAQEQEQAL 60 VDGFRKNVAL NEAENMCKES DNLDGNGESN GTNHEYPLRP YAEDCSFYLR TGCCKFGFYC 120 KFNHPVRRGF QGVKEMEGGG IVEHQQGQIQ CKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447207.2	2e-41	zinc finger CCCH domain-containing protein 43
Refseq	XP_006469940.1	2e-41	zinc finger CCCH domain-containing protein 43-like
Refseq	XP_024045834.1	2e-41	zinc finger CCCH domain-containing protein 43
Refseq	XP_024045835.1	2e-41	zinc finger CCCH domain-containing protein 43
TrEMBL	A0A067DSB2	5e-40	A0A067DSB2_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QKS6	1e-39	A0A2H5QKS6_CITUN; Uncharacterized protein
TrEMBL	A0A2H5QKV5	5e-40	A0A2H5QKV5_CITUN; Uncharacterized protein
STRING	XP_006469940.1	7e-41	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22971	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-15	C3H family protein