PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28800_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 150aa    MW: 16934.4 Da    PI: 8.9205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28800_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.53.5e-10131150322
                     -SS-EEEEEEE--TT-SS-E CS
            WRKY   3 DgynWrKYGqKevkgsefpr 22 
                     D ++WrKYGqK++kgs++pr
  Neem_28800_f_1 131 DMWAWRKYGQKPIKGSPYPR 150
                     99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-9116150IPR003657WRKY domain
PROSITE profilePS5081113.678124150IPR003657WRKY domain
SuperFamilySSF1182904.18E-7127150IPR003657WRKY domain
PfamPF031061.3E-5131150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDWDLQAIVR GCSSEISTSV MDIPHPQSCF HPSSLQQDVF FKFPDICEST TILDELEQLY  60
KPFYPQTIIT STTSMSVPSE VKKPKKMRKP QPISISANGT INTDEAAQPK KGKNPQKRVV  120
QQVTADALSC DMWAWRKYGQ KPIKGSPYPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439465.26e-65WRKY transcription factor 22 isoform X2
TrEMBLA0A2H5NG871e-63A0A2H5NG87_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006439465.15e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60902545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-28WRKY family protein