PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_2911_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 269aa MW: 31281.9 Da PI: 6.0122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_2911_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.5	7e-26	74	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr...traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ +++++GF++r++++++s ++++i+ r++vCskeg+r+ + +++e+ r +r+ tr gC+a+l++ ++ gkw+++ +++eHnHel+p Neem_2911_f_1 74 EFYEMFGRRMGFTIRNNRTRRSLKDNSIIGREYVCSKEGFRAAKYTNRES--RvlpSRPATREGCNAMLRIAAKDGGKWVIYGFVKEHNHELNP 165 6****************************************9998333..224599*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-23	74	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MASTSGQEFN SSRNYRRWLA ETFDGHETGD DELSDNFDGN ENFLQSSNPV FPLISEPTDP 60 YIGMEFDSAE DAREFYEMFG RRMGFTIRNN RTRRSLKDNS IIGREYVCSK EGFRAAKYTN 120 RESRVLPSRP ATREGCNAML RIAAKDGGKW VIYGFVKEHN HELNPSKIPP RRSHRIAFSE 180 VWFTEKLSGI SYMIDLDRLC DKDEKDLKIR ELSTELHREK KKSAAYQEQL CMVLKIVEEH 240 TQRLSSKVQV VTNNMRELES EEQESSYSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443022.1	1e-145	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_006478704.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478705.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478706.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_006478708.1	1e-145	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_024045386.1	1e-145	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_024045387.1	1e-145	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A2N9HNX5	1e-144	A0A2N9HNX5_FAGSY; Uncharacterized protein
TrEMBL	V4TS59	1e-144	V4TS59_9ROSI; Uncharacterized protein
STRING	XP_006478704.1	1e-145	(Citrus sinensis)
STRING	XP_006443022.1	1e-145	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-40	FAR1 family protein