PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29127_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB
Protein Properties Length: 158aa    MW: 17882.3 Da    PI: 10.1859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29127_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.22.1e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l  +v+++G+++W++I++ ++ gR++k+c++rw + 
   Neem_29127_f_1 12 KGPWSPEEDEALQLLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding58.51.5e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   Neem_29127_f_1  66 AFTPEEDEMIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.466762IPR017930Myb domain
SuperFamilySSF466891.94E-339105IPR009057Homeodomain-like
SMARTSM007176.3E-171160IPR001005SANT/Myb domain
PfamPF002494.8E-191257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-261365IPR009057Homeodomain-like
CDDcd001671.87E-151456No hitNo description
SMARTSM007171.8E-1563111IPR001005SANT/Myb domain
PROSITE profilePS5129421.60564113IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2466112IPR009057Homeodomain-like
CDDcd001672.90E-1266109No hitNo description
PfamPF002495.6E-1666108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MAFNRKEVDR IKGPWSPEED EALQLLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDEMIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSLMTGN  120
GNFGNCPSLM TGNATTVEKI RECGIRSAGD YRALYEPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-42111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-42111133105C-Myb DNA-Binding Domain
1msf_C6e-42111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275856.14e-85putative R2R3-Myb transcription factor
RefseqXP_006425988.14e-85transcription factor MYB44
SwissprotO231603e-69MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2H5N0293e-84A0A2H5N029_CITUN; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PDV96e-84A0A2H5PDV9_CITUN; Uncharacterized protein
TrEMBLA5HLW59e-84A5HLW5_CITSI; Putative R2R3-Myb transcription factor
TrEMBLA5HLW68e-84A5HLW6_CITSI; Putative R2R3-Myb transcription factor
TrEMBLA5HLW79e-84A5HLW7_CITSI; Putative R2R3-Myb transcription factor
TrEMBLA5HLW89e-84A5HLW8_CITSI; Putative R2R3-Myb transcription factor
TrEMBLV4RWL59e-84V4RWL5_9ROSI; Uncharacterized protein
STRINGXP_006466545.11e-84(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.18e-72myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]