PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29149_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 194aa MW: 21960.1 Da PI: 10.0559

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29149_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.9	4.1e-06	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Neem_29149_f_1 81 FVCEICNKGFQRDQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	14.1	0.00014	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Neem_29149_f_1 157 WKCEKCSKRYAVQSDWKAHSKIC 179 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.8E-6	80	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.05E-7	80	103	No hit	No description
Pfam	PF12171	2.3E-5	81	103	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	81	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	81	103	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2
SMART	SM00355	87	122	152	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-5	145	178	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.05E-7	152	177	No hit	No description
SMART	SM00355	130	157	177	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MMKACFLVEE NMSNLTSASG EVSASSGSRV ETGPMYTQQS FTSSTNEAPP PKKKRSLPGN 60 PDPDAEVIAL SPQSLLATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTNKVERKK 120 VYVCPESTCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG 180 TREYKCDCGK LFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-21	153	194	3	44	Zinc finger protein JACKDAW
5b3h_F	1e-21	153	194	3	44	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLKQRTNKVERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953394.1	1e-125	protein indeterminate-domain 7 isoform X3
Swissprot	Q8H1F5	4e-97	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A067GK77	1e-122	A0A067GK77_CITSI; Uncharacterized protein
TrEMBL	A0A067GN79	1e-123	A0A067GN79_CITSI; Uncharacterized protein
TrEMBL	A0A2H5PZ61	1e-122	A0A2H5PZ61_CITUN; Uncharacterized protein
STRING	XP_006475907.1	1e-123	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM155	28	306

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	2e-96	indeterminate(ID)-domain 2

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]