PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29304_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

MYB_related

Protein Properties

Length: 248aa MW: 27730 Da PI: 6.6674

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29304_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	14	43	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g W++eEde+l++ ++++G g+W+++++ Neem_29304_f_1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQ 43 678************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-15	6	43	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-8	7	45	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.929	9	56	IPR017930	Myb domain
Pfam	PF00249	3.9E-7	14	43	IPR001005	SANT/Myb domain
CDD	cd00167	1.23E-6	17	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQADRFATS HHESSITSSQ 60 PSDFVGHFPL QQLNCTSNAK LSTASNSPLW FMQTSKSFDM NSEFSSTAIP TILPPVSSSL 120 LLSAPMSFKT SVTLPSDNHS IPSFTVNGSR YWEAADCSSS EKEAQLHLID NQPEDIKWPE 180 YFQTPSLLMA AALQTPQSLF NEIKSETHFL TDSSSGIWPH NQQQQVALQN SDICAKEIQR 240 LTATYGQI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT344120	2e-39	KT344120.1 Betula platyphylla MYB61 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006444636.1	1e-102	transcription factor MYB61
TrEMBL	A0A2H5NYP9	1e-101	A0A2H5NYP9_CITUN; Uncharacterized protein
TrEMBL	V4U6S6	1e-101	V4U6S6_9ROSI; Uncharacterized protein
STRING	XP_006444636.1	1e-101	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.2	4e-27	myb domain protein 55