PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29319_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 108aa    MW: 12448.2 Da    PI: 10.0654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29319_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.86e-141464347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     +W t+E++ll++av+++G+++W+++a +++      + +t+ +c+ +++++
   Neem_29319_f_2 14 AWGTWEELLLACAVHRYGNENWSSVATEVQkrssrlQLLTPRSCQQKYRDL 64
                     7***********************************99**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-7769IPR009057Homeodomain-like
PROSITE profilePS500906.144765IPR017877Myb-like domain
SMARTSM007171.7E-61167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-71164IPR009057Homeodomain-like
CDDcd001672.45E-71464No hitNo description
PfamPF002491.0E-121464IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MDKPSDNFPE KQTAWGTWEE LLLACAVHRY GNENWSSVAT EVQKRSSRLQ LLTPRSCQQK  60
YRDLERRFVP NGAASLADNK SIPWLDELKK LRVAARWLIT RVFPGSTS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429854.28e-41uncharacterized protein LOC18038098
TrEMBLA0A067EGV22e-39A0A067EGV2_CITSI; Uncharacterized protein
STRINGXP_006492877.14e-40(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.15e-25DNA-binding bromodomain-containing protein