PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29403_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 225aa    MW: 25542.8 Da    PI: 9.5037
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29403_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260104.11.2e-3215108193
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                     aCaaCk++r+kC+++C la+yfp++++++f++vhk+FG+sn++k++ ++++ee r+++++sl++e+ +r++dP++G++g ++k+  ql+   ++
  Neem_29403_f_1  15 ACAACKHQRKKCSEECKLARYFPSDRNREFQAVHKVFGVSNLTKIIYSVNDEEnRRKVVDSLIWESSCRQKDPISGSYGEYKKVLDQLKLCTNQ 108
                     7************************************************77666*****************************99988766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.87514116IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-3115109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MHKNNHKSGT SVQSACAACK HQRKKCSEEC KLARYFPSDR NREFQAVHKV FGVSNLTKII  60
YSVNDEENRR KVVDSLIWES SCRQKDPISG SYGEYKKVLD QLKLCTNQTP MQCQNQNQNQ  120
NQLVQLPHAG IIYRSSSFTT GWNNGGNGLN MDGIINNNAL NYDNGNSIIE MDNYGYAPHN  180
FVPSPKNLKQ GREVNLIEEV ACSRKELIKV HGKYKMWKKL NQGGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-1614931088LOB family transfactor Ramosa2.1
5ly0_B2e-1614931088LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950727.15e-74LOB domain-containing protein 2
TrEMBLA0A067DW227e-73A0A067DW22_CITSI; Uncharacterized protein
STRINGXP_006469134.12e-73(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105392635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.17e-36LOB domain-containing protein 2