PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_29472_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 103aa MW: 11786.9 Da PI: 6.2687

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_29472_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.6e-15	26	82	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++kr+rr+ +NRe+ArrsR+RK+a + eLe + +L e ++L k l ++ ++++ Neem_29472_f_1 26 DDKRARRMLSNRESARRSRRRKQAHLNELESQAGQLRVEHSSLLKGLTDMNHKCDEA 82 69******************************************9888888888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-12	21	80	No hit	No description
SMART	SM00338	8.4E-15	24	88	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.588	26	78	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-12	27	80	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.76E-11	28	77	No hit	No description
PROSITE pattern	PS00036	0	31	46	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
GSSRDDSDDD ELDGDMETTE GSDQLDDKRA RRMLSNRESA RRSRRRKQAH LNELESQAGQ 60 LRVEHSSLLK GLTDMNHKCD EAAVNNRILK AEIETLRAKY TSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	47	RRSRRRKQ
2	42	47	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
UniProt	Transcriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:7919992}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006443938.2	1e-41	light-inducible protein CPRF2 isoform X2
Refseq	XP_006479610.1	1e-41	light-inducible protein CPRF2 isoform X2
Refseq	XP_006479611.1	2e-42	light-inducible protein CPRF2 isoform X3
Swissprot	Q6ETX0	8e-25	RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
Swissprot	Q99090	3e-24	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A067FQY4	9e-42	A0A067FQY4_CITSI; Uncharacterized protein
TrEMBL	V4TUM9	5e-43	V4TUM9_9ROSI; Uncharacterized protein (Fragment)
TrEMBL	V4TZK9	7e-43	V4TZK9_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006479609.1	6e-41	(Citrus sinensis)
STRING	XP_006443936.1	3e-42	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5848	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.3	1e-20	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development. Plant Cell, 1994. 6(9): p. 1277-87 [PMID:7919992]