PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2949_f_14
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WOX
Protein Properties Length: 244aa    MW: 27435.5 Da    PI: 5.861
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2949_f_14genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-2191151257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  Neem_2949_f_14  91 RQRWTPTPVQLQILESIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 151
                     89*****************99**************************************97 PP
2Wus_type_Homeobox104.28.9e-3490153265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtPtp Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
     Neem_2949_f_14  90 ARQRWTPTPVQLQILESIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 153
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-1886156IPR009057Homeodomain-like
PROSITE profilePS5007114.96587152IPR001356Homeobox domain
SMARTSM003895.0E-1589156IPR001356Homeobox domain
SuperFamilySSF466896.42E-1990155IPR009057Homeodomain-like
PfamPF000461.8E-1991151IPR001356Homeobox domain
CDDcd000861.38E-1491153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEWENRESQE NQSQQRGENG GNVNGIMYVK VMTDEQLETL RKQIAVYATI CEQLVEMHKS  60
LSAQQDLAGG RLGHIYCDPL MTSAGHKITA RQRWTPTPVQ LQILESIFDQ GNGTPSKQKI  120
KEITAELSQH GQISETNVYN WFQNRRARSK RKQAVASSNN GESEVEAEVD SLHEKKTKPE  180
NCSSQQNPAP RVADDLCFHS PEITSELHFL GVLPTPRDDH LTGKMGMSGS YNLYERAEDY  240
SIAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021674924.11e-138WUSCHEL-related homeobox 13
SwissprotO817881e-105WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A2C9WCZ01e-135A0A2C9WCZ0_MANES; Uncharacterized protein
STRINGcassava4.1_014347m1e-136(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46202851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.11e-106WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]