PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29677_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YA
Protein Properties Length: 243aa    MW: 26795.3 Da    PI: 10.0436
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29677_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.7e-30145201158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RR++Rak+  e+kl +k rkpy+h SRh hA+rRpRg+gGrF
  Neem_29677_f_1 145 DGPIYVNAKQYHGIMRRRKSRAKAVLENKL-TKRRKPYMHYSRHLHAMRRPRGCGGRF 201
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.0E-34143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.776144204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.1E-22147169IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.8E-26147201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.1E-22178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAMQTVYFKE HEGNAHNQIG QFSSVQSTPW WTSLGSQSLC GGLMKPFSME TPTEQSGQRM  60
EKGSTTHFTF FPGDSKSSGD GQKLPAAISL QSALPENPGF FELGFGQPMI CAKYPYVDQC  120
CGVFSTYGAQ ISGRIMLPLN LASDDGPIYV NAKQYHGIMR RRKSRAKAVL ENKLTKRRKP  180
YMHYSRHLHA MRRPRGCGGR FLNTRNADGH GNGNGNENGK GGTEEKKAGD PLLPQPTGSQ  240
TWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-17145208265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163MRRRKS
2160178RRKSRAKAVLENKLTKRRK
3160179RRKSRAKAVLENKLTKRRKP
4161179RKSRAKAVLENKLTKRRKP
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481615.11e-127nuclear transcription factor Y subunit A-10
SwissprotQ8LFU05e-56NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBLA0A067FTI61e-126A0A067FTI6_CITSI; Uncharacterized protein
STRINGXP_006481615.11e-126(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-58nuclear factor Y, subunit A10
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]