PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29926_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 150aa    MW: 16488.4 Da    PI: 8.9658
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29926_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.56.7e-17741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Neem_29926_f_1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.6E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-12545No hitNo description
CDDcd002021.81E-16654No hitNo description
Gene3DG3DSA:3.30.50.102.6E-13741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003201.1E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAEPDDYEDH  60
RVSKVKSISI NKSKDVKVLK RKSNNDNVVV GGFIPDYNQG YRKFVDEDTS NRSSSGSAIS  120
NSESCAQFGS ADASDLTGWA LIKVNLNYPF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440183.14e-84GATA transcription factor 26
RefseqXP_006477095.14e-84GATA transcription factor 26
SwissprotQ8W4H19e-54GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A067EPE19e-83A0A067EPE1_CITSI; Uncharacterized protein
TrEMBLA0A067F0N47e-84A0A067F0N4_CITSI; Uncharacterized protein
TrEMBLA0A067F1G01e-83A0A067F1G0_CITSI; Uncharacterized protein
TrEMBLA0A2H5QD598e-83A0A2H5QD59_CITUN; Uncharacterized protein
TrEMBLV4SZX29e-83V4SZX2_9ROSI; Uncharacterized protein
STRINGXP_006477095.11e-83(Citrus sinensis)
STRINGXP_006440183.11e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.36e-46GATA transcription factor 26