PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2999_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 265aa    MW: 29834.9 Da    PI: 9.0322
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2999_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-06124145223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    +C+ Cg++F++++ L+ H+  H
  Neem_2999_f_4 124 RCTTCGTRFKTQEKLRDHMDWH 145
                    6******************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.536123150IPR007087Zinc finger, C2H2
PROSITE patternPS000280125145IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MPLVTAPYSV RGTQVNTGMI PVRPSFCVPV DGGRVVMSKS EPAVQRPTQT IVSKQQHVNS  60
DFNLISSFLE GLNSFVSQQP GLISPSTQQK PEAEDSIGLE FDPAKLKVRH ESVIRALYAD  120
LPRRCTTCGT RFKTQEKLRD HMDWHVRKNR IANKNKKKLS RHFSPASSMW LKDAAGANGN  180
SPTPAFSTTD TAEKVKNYEE LFAVLADENQ KECALCMEPF NECYSNETED WMYRGAVYLN  240
EANASRRKWY KSMLGRIVHA KCIDA