PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30031_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 255aa    MW: 28358.7 Da    PI: 10.4795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30031_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-066183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Neem_30031_f_1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                    89*******************88 PP
2zf-C2H218.36.3e-06137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k +  +s+ k H++t+
  Neem_30031_f_1 137 YKCERCSKKYAVQSDWKAHMKTC 159
                     9********************98 PP
3zf-C2H210.60.0017167185523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg+ Fsr++++ +H   +
  Neem_30031_f_1 167 DCGTIFSRRDSFITHRAFC 185
                     8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.22E-96083No hitNo description
Gene3DG3DSA:3.30.160.607.0E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.4E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM0035589102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-6125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.22E-9132158No hitNo description
PROSITE profilePS501578.517137165IPR007087Zinc finger, C2H2
SMARTSM0035543137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MTVSTATGEA SVSSPGSQIE MIPLSAAPPP QKKKRNLPGM PDPDSLVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNSKEIRKK VYVCPEPTCV HHNPARALGD  120
LTGIKKHFSR KHGEKKYKCE RCSKKYAVQS DWKAHMKTCG TREYKCDCGT IFSRRDSFIT  180
HRAFCDALAE ESARAQTLPV ASREENPNAK TVASPPPPPL TPSTGVVSPG LSIQSSESIS  240
SKIKKKLRGY RERTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-37133199369Zinc finger protein JACKDAW
5b3h_F5e-37133199369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799KLKQRNSKEIRKK
2241247KIKKKLR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473474.11e-142protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-113IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A067H9P51e-141A0A067H9P5_CITSI; Uncharacterized protein
TrEMBLA0A1U8JB631e-140A0A1U8JB63_GOSHI; protein indeterminate-domain 2-like
STRINGXP_006473473.11e-141(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-115C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]