PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_30344_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 255aa MW: 29029.6 Da PI: 4.9763

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30344_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.1	2e-40	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ +++am+++++++++ra+dPv G++++i++lq+q+e kael+ Neem_30344_f_1 18 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKTLEPPAKDEAMRTIIFQSDVRASDPVGGCYRIIRELQRQIEYNKAELE 112 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ Neem_30344_f_1 113 LVLHQ 117 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	19	No hit	No description
PROSITE profile	PS50891	24.925	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-37	18	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MSNIPRIGSS NGATTTQACA ACKYQRRKCA PDCILAPYFP HDRQRQFLNA HKLFGVSNIT 60 KIIKTLEPPA KDEAMRTIIF QSDVRASDPV GGCYRIIREL QRQIEYNKAE LELVLHQLAI 120 FRAQTQQQPQ NPLQMPETDD SVLSYEIMNA AAEPLNVQNY TYNVQPTPTQ QQNQELVNVR 180 NQLQQEEDVN AWAMQDPTIL STLNVNNDNG ISSNDDVKPQ FVEIPCERHD VKFEQDQEGL 240 VERRFVPSTQ LLISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-26	19	112	12	105	LOB family transfactor Ramosa2.1
5ly0_B	5e-26	19	112	12	105	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006466020.1	1e-119	LOB domain-containing protein 22
Refseq	XP_024036018.1	1e-119	LOB domain-containing protein 22
Swissprot	Q9LRW1	2e-66	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A2H5NEP0	1e-118	A0A2H5NEP0_CITUN; Uncharacterized protein
STRING	XP_006466020.1	1e-119	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-61	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]