PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_30371_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 209aa MW: 22792 Da PI: 8.8926

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30371_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	82.2	8e-26	4	93	1	85
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C++lr++C++dC++ p++ +++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ dP++G+vg++ + + Neem_30371_f_1 4 SCNGCRILRKGCSDDCIIKPCLdwinsADSQANATLFLAKFYGRAGLINLIEAGPPHLRPAIFKSLLYEACGRIVDPISGSVGLLCTSSA 93 6*******************9999777889*************************************************9987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.151	3	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-22	4	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSDDCI IKPCLDWINS ADSQANATLF LAKFYGRAGL INLIEAGPPH 60 LRPAIFKSLL YEACGRIVDP ISGSVGLLCT SSATPAAALA STPSNPPLKI YDIRHVSKDP 120 GSENSKSRLK RSWNRQPKPS VGANQSRGKA LSHEYSWLQN QFGHAESRED ESIFSVETVE 180 GSLMNRSKPR LAQNEVGLEL TLGLPPINQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469084.1	4e-88	LOB domain-containing protein 42
Swissprot	Q9CA30	4e-60	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A2H5P571	4e-86	A0A2H5P571_CITUN; Uncharacterized protein
TrEMBL	V4UHF9	4e-86	V4UHF9_9ROSI; Uncharacterized protein
STRING	XP_006469084.1	2e-87	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8463	26	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	3e-56	LOB domain-containing protein 42