PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3041_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HRT-like

Protein Properties

Length: 342aa MW: 38253.5 Da PI: 9.8098

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3041_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	43.9	4.1e-14	155	185	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+d vC+++ v+gRKRC +H G Ri Neem_3041_f_1 155 ICGVSLGDDFVCRMPTVEGRKRCSQHRGLRI 185 8*****************************7 PP
2	HRT-like	55	1.3e-17	209	238	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l+dGs C+r+Pv+g+KRCeeHK ++ Neem_3041_f_1 209 ICGVVLDDGSLCRRPPVQGNKRCEEHKWRK 238 8**************************766 PP
3	HRT-like	58	1.5e-18	295	324	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l dG++C+rqP kgR RCeeHKGm+ Neem_3041_f_1 295 ICGVDLVDGTFCTRQPFKGRVRCEEHKGMK 324 8****************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MKNKAAALKT ESELLNTFDY AWNKGSNGTR RRDDVLQKLD KVSSNYIQFP VNTFDYAWNK 60 GSNGTRRRDD VLQKLDKVSS NYIQFPKTIR KLLYISQKPA GITIKASKLP LERNKFSTYA 120 DEESHNFFSE IFKFTKSRPR LVLDKCGANE DCTGICGVSL GDDFVCRMPT VEGRKRCSQH 180 RGLRISGSNP VKLPVVAEKC SVGEGVSSIC GVVLDDGSLC RRPPVQGNKR CEEHKWRKIN 240 GSTSKTMGTS QFVHDAVFDS NPRGGSNFSE MYGPEKVEPQ ISLDRSATKL HDDTICGVDL 300 VDGTFCTRQP FKGRVRCEEH KGMKTKGIKS KSATQDKSHK AC

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MKNKAAALKT ESELLNTFDY AWNKGSNGTR RRDDVLQKLD KVSSNYIQFP VNTFDYAWNK  60
GSNGTRRRDD VLQKLDKVSS NYIQFPKTIR KLLYISQKPA GITIKASKLP LERNKFSTYA  120
DEESHNFFSE IFKFTKSRPR LVLDKCGANE DCTGICGVSL GDDFVCRMPT VEGRKRCSQH  180
RGLRISGSNP VKLPVVAEKC SVGEGVSSIC GVVLDDGSLC RRPPVQGNKR CEEHKWRKIN  240
GSTSKTMGTS QFVHDAVFDS NPRGGSNFSE MYGPEKVEPQ ISLDRSATKL HDDTICGVDL  300
VDGTFCTRQP FKGRVRCEEH KGMKTKGIKS KSATQDKSHK AC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024033802.1	1e-108	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A067EVV1	1e-108	A0A067EVV1_CITSI; Uncharacterized protein
TrEMBL	V4UKC3	1e-106	V4UKC3_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006451430.1	1e-107	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-37	effector of transcription2