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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_3058_f_2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | GRAS | ||||||||
| Protein Properties | Length: 466aa MW: 52205 Da PI: 7.0029 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 365.6 | 6.6e-112 | 93 | 464 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkf 93
lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++L rla ++ + + + + ++ s+e+ al+l +e++P ++f
Neem_3058_f_2 93 LVQLLIACAEAVACRDKAHASALLSELRANALVFGSSFQRVASCFVQGLTDRLALVQPLGTVGFVAPTMNIMDiasSDEKEEALRLVYEICPHIQF 188
689***************************************************9554433334444444444667899999************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
+hl+aN+ Ilea+ege+ vH++D++++ Gl QW L+++La+R+++pp +lRiT+vg ++ + +g+ L+++A+++g+++ef+v v +
Neem_3058_f_2 189 GHLVANSSILEAFEGESFVHVVDLGMTLGLprghQWRRLIESLANRAGQPPrRLRITAVGL----CVDKFQIIGHDLQDYAKKFGINLEFSV-VKS 279
***********************99886433333*************877779********....**************************9.799 PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
+le+l++e+++v+++E+l+Vn++lqlh +++es + +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ +
Neem_3058_f_2 280 NLENLRPEDIQVHENEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 372
******************************88877777...8****************************************************** PP
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
r+k+E++++++ei+n+v+ceg r+erhe++ +Wr+r+++aGF+++p++ a qa+ l++ k +gy+v ee+g+lvlgWk++p++++S+W
Neem_3058_f_2 373 RRAKIEQFYFAEEIKNIVSCEGPVRVERHERVDQWRRRMSRAGFQAAPIKMIA--QAQKWLHNKKlCEGYTVVEEKGCLVLGWKSKPIIATSCW 464
*************************************************8665..666677777778*************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 59.617 | 67 | 446 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.3E-109 | 93 | 464 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 466 aa Download sequence Send to blast |
MVHEFLSNKL YSDQRSNEVI GLELGLSAVN CYLPLLENTA ASWILSLPDD QTRDQKRLKR 60 TVSIADSIAS GNSSISRSSS TSEEDGNRDG MRLVQLLIAC AEAVACRDKA HASALLSELR 120 ANALVFGSSF QRVASCFVQG LTDRLALVQP LGTVGFVAPT MNIMDIASSD EKEEALRLVY 180 EICPHIQFGH LVANSSILEA FEGESFVHVV DLGMTLGLPR GHQWRRLIES LANRAGQPPR 240 RLRITAVGLC VDKFQIIGHD LQDYAKKFGI NLEFSVVKSN LENLRPEDIQ VHENEVLVVN 300 SILQLHCVVK ESRGALNSVL QIIHELSPKL LVLVEQDSSH NGPFFLGRFM EALHYYSAIF 360 DSLDAMLPKY DTRRAKIEQF YFAEEIKNIV SCEGPVRVER HERVDQWRRR MSRAGFQAAP 420 IKMIAQAQKW LHNKKLCEGY TVVEEKGCLV LGWKSKPIIA TSCWNC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 5e-61 | 77 | 465 | 3 | 379 | Protein SCARECROW |
| 5b3h_A | 5e-61 | 87 | 465 | 12 | 378 | Protein SCARECROW |
| 5b3h_D | 5e-61 | 87 | 465 | 12 | 378 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006440048.1 | 0.0 | DELLA protein RGL1 | ||||
| TrEMBL | A0A067G0U0 | 0.0 | A0A067G0U0_CITSI; Uncharacterized protein | ||||
| STRING | XP_006440048.1 | 0.0 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM16018 | 8 | 14 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 4e-77 | RGA-like 1 | ||||




