PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3058_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 466aa    MW: 52205 Da    PI: 7.0029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3058_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.66.6e-112934641373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkf 93 
                    lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++L  rla  ++     + + + + ++   s+e+  al+l +e++P ++f
  Neem_3058_f_2  93 LVQLLIACAEAVACRDKAHASALLSELRANALVFGSSFQRVASCFVQGLTDRLALVQPLGTVGFVAPTMNIMDiasSDEKEEALRLVYEICPHIQF 188
                    689***************************************************9554433334444444444667899999************** PP

           GRAS  94 shltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                    +hl+aN+ Ilea+ege+ vH++D++++ Gl    QW  L+++La+R+++pp +lRiT+vg       ++ + +g+ L+++A+++g+++ef+v v +
  Neem_3058_f_2 189 GHLVANSSILEAFEGESFVHVVDLGMTLGLprghQWRRLIESLANRAGQPPrRLRITAVGL----CVDKFQIIGHDLQDYAKKFGINLEFSV-VKS 279
                    ***********************99886433333*************877779********....**************************9.799 PP

           GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                    +le+l++e+++v+++E+l+Vn++lqlh +++es    +   +vL+++ +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + 
  Neem_3058_f_2 280 NLENLRPEDIQVHENEVLVVNSILQLHCVVKESRGALN---SVLQIIHELSPKLLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 372
                    ******************************88877777...8****************************************************** PP

           GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r+k+E++++++ei+n+v+ceg  r+erhe++ +Wr+r+++aGF+++p++  a  qa+  l++ k  +gy+v ee+g+lvlgWk++p++++S+W
  Neem_3058_f_2 373 RRAKIEQFYFAEEIKNIVSCEGPVRVERHERVDQWRRRMSRAGFQAAPIKMIA--QAQKWLHNKKlCEGYTVVEEKGCLVLGWKSKPIIATSCW 464
                    *************************************************8665..666677777778*************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.61767446IPR005202Transcription factor GRAS
PfamPF035142.3E-10993464IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MVHEFLSNKL YSDQRSNEVI GLELGLSAVN CYLPLLENTA ASWILSLPDD QTRDQKRLKR  60
TVSIADSIAS GNSSISRSSS TSEEDGNRDG MRLVQLLIAC AEAVACRDKA HASALLSELR  120
ANALVFGSSF QRVASCFVQG LTDRLALVQP LGTVGFVAPT MNIMDIASSD EKEEALRLVY  180
EICPHIQFGH LVANSSILEA FEGESFVHVV DLGMTLGLPR GHQWRRLIES LANRAGQPPR  240
RLRITAVGLC VDKFQIIGHD LQDYAKKFGI NLEFSVVKSN LENLRPEDIQ VHENEVLVVN  300
SILQLHCVVK ESRGALNSVL QIIHELSPKL LVLVEQDSSH NGPFFLGRFM EALHYYSAIF  360
DSLDAMLPKY DTRRAKIEQF YFAEEIKNIV SCEGPVRVER HERVDQWRRR MSRAGFQAAP  420
IKMIAQAQKW LHNKKLCEGY TVVEEKGCLV LGWKSKPIIA TSCWNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-61774653379Protein SCARECROW
5b3h_A5e-618746512378Protein SCARECROW
5b3h_D5e-618746512378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440048.10.0DELLA protein RGL1
TrEMBLA0A067G0U00.0A0A067G0U0_CITSI; Uncharacterized protein
STRINGXP_006440048.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16018814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-77RGA-like 1