PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30596_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YC
Protein Properties Length: 244aa    MW: 28289.3 Da    PI: 6.7145
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30596_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC132.41.4e-4160161299
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     + +fw++q   i ++t fk nh+lPlarik+i+k++ dvkmisa++P++++kacelfileltlr+wl++ee++rrtl+++dia a+   +i dfl
  Neem_30596_f_1  60 IDMFWNRQlfeIYNTTVFKsNHQLPLARIKRIIKSNGDVKMISADTPIVFAKACELFILELTLRAWLQTEECRRRTLQRCDIARALRLDEILDFL 154
                     579*****877788999999*************************************************************************** PP

           NF-YC  93 vdivprd 99 
                     vd vp +
  Neem_30596_f_1 155 VDFVPCN 161
                     ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-2638154IPR009072Histone-fold
PfamPF008082.9E-1682145IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.1E-3083159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MRRPKVDLNQ ALEFKSSTPS PQQQQQVHNF MPITPFLLPY HQDEEEAINS CLMQKQKQNI  60
DMFWNRQLFE IYNTTVFKSN HQLPLARIKR IIKSNGDVKM ISADTPIVFA KACELFILEL  120
TLRAWLQTEE CRRRTLQRCD IARALRLDEI LDFLVDFVPC NSHKDDDSDN SSEEINELHP  180
LHPANQVYSP GVDINGKFNP NHDVPQQIVM KPSLTLAEFN HGSTSPRWKA KAEAKVTEMY  240
EKLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3367159394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021672515.17e-78nuclear transcription factor Y subunit C-10-like isoform X2
TrEMBLA0A067FAR04e-77A0A067FAR0_CITSI; Uncharacterized protein
TrEMBLA0A2H5NUP04e-77A0A2H5NUP0_CITUN; Uncharacterized protein
STRINGXP_002528069.13e-73(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1809079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-40nuclear factor Y, subunit C2