PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30599_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 115aa    MW: 13074.8 Da    PI: 7.9395
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30599_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM42.32.3e-133611054127
             NAM  54 eekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                     +++++yfF+k +kk+++g+r nr++    g W+     +e++s+ +++lvg  k + + k+   +  +  W+mhey+
  Neem_30599_f_1  36 GDEDLYFFTKLKKKTPKGSRINRKVGlgGGAWQGEDAPTEIVSNkTQKLVGSNKRFCYEKE--DSDDNGCWIMHEYT 110
                     67899******************86655999*****9999999756677********9854..444599*******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.9691115IPR003441NAC domain
SuperFamilySSF1019419.42E-208110IPR003441NAC domain
PfamPF023652.3E-1610110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MHETGPCIIV GHRFMPADAE LVEYYLYQKA GNLLKGDEDL YFFTKLKKKT PKGSRINRKV  60
GLGGGAWQGE DAPTEIVSNK TQKLVGSNKR FCYEKEDSDD NGCWIMHEYT GRCSY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041996.13e-32NAC domain-containing protein 83
TrEMBLV4TL451e-32V4TL45_9ROSI; Uncharacterized protein
STRINGXP_006437301.12e-33(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15170.18e-13NAC family protein