PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3063_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 517aa    MW: 57689.2 Da    PI: 4.6047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3063_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.12.5e-1121405101374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilk 92 
                    lv+lLl+cAeav  +d++la+++L+++   a+p gd++qR+ ++f+ +L++rl+   +++ +  +  + + +      +e++ a++l+++++P++ 
  Neem_3063_f_1 140 LVHLLLACAEAVGCRDTQLADSMLSQIWASANPWGDSLQRVSFCFAMGLKSRLSL-LQNINANGTFVNGAIDAslitREEKIEAFQLLYQTTPYIA 234
                    68***************************************************98.444444433333332223466999**************** PP

           GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rle 187
                    +++++aN aI +a++g++ +HiiD+++++ lQWp+Ll++LasR +gpp++RiTg+ + +  ++ ele+  + L + A++ g+++ef++++++ + +
  Neem_3063_f_1 235 LGFMAANGAICQAAQGKDSLHIIDLGMEHTLQWPSLLRSLASRLDGPPKIRITGLINDQ--NHSELEASMNSLVQDASSQGISLEFSTIAEQvTPS 328
                    *********************************************************66..999************************96666889 PP

           GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ e+L++++gE+l Vn++++lh+ ++es  + +   ++L+++k+l+P +++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+
  Neem_3063_f_1 329 LLTKENLNLREGETLFVNSIMHLHKYVKESRGSLK---AILQAIKKLNPALLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSLQRM 421
                    99*************************88776666...9********************************************************* PP

           GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++Er  +++ei+n+va eg++r+erhe++ +Wr++l++aGF+ v l++  ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
  Neem_3063_f_1 422 NIERLHFAEEIRNIVAYEGSDRIERHERADQWRRQLGRAGFQVVGLKS--VSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMIASAWQ 510
                    *********************************************976..89**************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.322114492IPR005202Transcription factor GRAS
PfamPF035148.6E-110140510IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MNGILCFPMH DSFNHDLAIR RFCPARVEQE QEEWEEMMNL EVELLSPSEN TSDTPRFSAS  60
EVDEFVDSFI NMDQEDNEDD LINMSLSSAA KYEDEIYGGE AADDHKSEMS SISCEDFRVV  120
PEMVPSVEEV SHGVDQGLHL VHLLLACAEA VGCRDTQLAD SMLSQIWASA NPWGDSLQRV  180
SFCFAMGLKS RLSLLQNINA NGTFVNGAID ASLITREEKI EAFQLLYQTT PYIALGFMAA  240
NGAICQAAQG KDSLHIIDLG MEHTLQWPSL LRSLASRLDG PPKIRITGLI NDQNHSELEA  300
SMNSLVQDAS SQGISLEFST IAEQVTPSLL TKENLNLREG ETLFVNSIMH LHKYVKESRG  360
SLKAILQAIK KLNPALLTVV EQDANHNGPF FLGRFLESLH YYSAIFDSLE ASLPRNSLQR  420
MNIERLHFAE EIRNIVAYEG SDRIERHERA DQWRRQLGRA GFQVVGLKSV SQARMMLSVY  480
GCDGYTLACE KGCLLLGWKG RPIMIASAWQ VNNASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6214750926378Protein SCARECROW
5b3h_A8e-6214750925377Protein SCARECROW
5b3h_D8e-6214750925377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422278.20.0DELLA protein RGL1
RefseqXP_006493798.10.0DELLA protein RGL1-like
TrEMBLA0A2H5NQN00.0A0A2H5NQN0_CITUN; Uncharacterized protein
STRINGXP_006493798.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17612910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-82RGA-like 1