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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Neem_3063_f_1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | GRAS | ||||||||
| Protein Properties | Length: 517aa MW: 57689.2 Da PI: 4.6047 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 367.1 | 2.5e-112 | 140 | 510 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilk 92
lv+lLl+cAeav +d++la+++L+++ a+p gd++qR+ ++f+ +L++rl+ +++ + + + + + +e++ a++l+++++P++
Neem_3063_f_1 140 LVHLLLACAEAVGCRDTQLADSMLSQIWASANPWGDSLQRVSFCFAMGLKSRLSL-LQNINANGTFVNGAIDAslitREEKIEAFQLLYQTTPYIA 234
68***************************************************98.444444433333332223466999**************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rle 187
+++++aN aI +a++g++ +HiiD+++++ lQWp+Ll++LasR +gpp++RiTg+ + + ++ ele+ + L + A++ g+++ef++++++ + +
Neem_3063_f_1 235 LGFMAANGAICQAAQGKDSLHIIDLGMEHTLQWPSLLRSLASRLDGPPKIRITGLINDQ--NHSELEASMNSLVQDASSQGISLEFSTIAEQvTPS 328
*********************************************************66..999************************96666889 PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
l+ e+L++++gE+l Vn++++lh+ ++es + + ++L+++k+l+P +++vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +r+
Neem_3063_f_1 329 LLTKENLNLREGETLFVNSIMHLHKYVKESRGSLK---AILQAIKKLNPALLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEASLPRNSLQRM 421
99*************************88776666...9********************************************************* PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
++Er +++ei+n+va eg++r+erhe++ +Wr++l++aGF+ v l++ ++qa+++l+ ++ dgy++ +e+g+l+lgWk+rp++ +SaW+
Neem_3063_f_1 422 NIERLHFAEEIRNIVAYEGSDRIERHERADQWRRQLGRAGFQVVGLKS--VSQARMMLSVYGCDGYTLACEKGCLLLGWKGRPIMIASAWQ 510
*********************************************976..89**************************************6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 53.322 | 114 | 492 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 8.6E-110 | 140 | 510 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 517 aa Download sequence Send to blast |
MNGILCFPMH DSFNHDLAIR RFCPARVEQE QEEWEEMMNL EVELLSPSEN TSDTPRFSAS 60 EVDEFVDSFI NMDQEDNEDD LINMSLSSAA KYEDEIYGGE AADDHKSEMS SISCEDFRVV 120 PEMVPSVEEV SHGVDQGLHL VHLLLACAEA VGCRDTQLAD SMLSQIWASA NPWGDSLQRV 180 SFCFAMGLKS RLSLLQNINA NGTFVNGAID ASLITREEKI EAFQLLYQTT PYIALGFMAA 240 NGAICQAAQG KDSLHIIDLG MEHTLQWPSL LRSLASRLDG PPKIRITGLI NDQNHSELEA 300 SMNSLVQDAS SQGISLEFST IAEQVTPSLL TKENLNLREG ETLFVNSIMH LHKYVKESRG 360 SLKAILQAIK KLNPALLTVV EQDANHNGPF FLGRFLESLH YYSAIFDSLE ASLPRNSLQR 420 MNIERLHFAE EIRNIVAYEG SDRIERHERA DQWRRQLGRA GFQVVGLKSV SQARMMLSVY 480 GCDGYTLACE KGCLLLGWKG RPIMIASAWQ VNNASSS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 8e-62 | 147 | 509 | 26 | 378 | Protein SCARECROW |
| 5b3h_A | 8e-62 | 147 | 509 | 25 | 377 | Protein SCARECROW |
| 5b3h_D | 8e-62 | 147 | 509 | 25 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006422278.2 | 0.0 | DELLA protein RGL1 | ||||
| Refseq | XP_006493798.1 | 0.0 | DELLA protein RGL1-like | ||||
| TrEMBL | A0A2H5NQN0 | 0.0 | A0A2H5NQN0_CITUN; Uncharacterized protein | ||||
| STRING | XP_006493798.1 | 0.0 | (Citrus sinensis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM17612 | 9 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 2e-82 | RGA-like 1 | ||||




