PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_30861_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 217aa MW: 24876.2 Da PI: 8.7473

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_30861_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.5	4.3e-56	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ +++ ++i +vd++k+ePwdLp+k++ +ekewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ Neem_30861_f_1 5 LPPGFRFHPTDEELITYYLTRKVADLSFSS-KAIVDVDLNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATDAGYWKTTGKDKEIFR- 97 79***********************999.88***********999999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 g lvg+kktLvfykgrapkgek++Wvmheyrle Neem_30861_f_1 98 AGILVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	60.251	5	151	IPR003441	NAC domain
Pfam	PF02365	5.9E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT YYLTRKVADL SFSSKAIVDV DLNKCEPWDL PAKASMGEKE 60 WYFFNLRDRK YPTGLRTNRA TDAGYWKTTG KDKEIFRAGI LVGMKKTLVF YKGRAPKGEK 120 SNWVMHEYRL ENKHPFKSAK EEWVVCRVFQ KSSAVKKPQQ TLSSQPSEGS PCDTNSIVNE 180 FGDIELPNLN SIANLSTGFS NIPTQTYENN VNMNMLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-59	4	157	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	8e-59	4	157	19	174	NAC domain-containing protein 19
3swm_B	8e-59	4	157	19	174	NAC domain-containing protein 19
3swm_C	8e-59	4	157	19	174	NAC domain-containing protein 19
3swm_D	8e-59	4	157	19	174	NAC domain-containing protein 19
3swp_A	8e-59	4	157	19	174	NAC domain-containing protein 19
3swp_B	8e-59	4	157	19	174	NAC domain-containing protein 19
3swp_C	8e-59	4	157	19	174	NAC domain-containing protein 19
3swp_D	8e-59	4	157	19	174	NAC domain-containing protein 19
4dul_A	6e-59	4	157	16	171	NAC domain-containing protein 19
4dul_B	6e-59	4	157	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022738286.1	1e-139	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	3e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A061FUV1	1e-136	A0A061FUV1_THECC; NAC domain protein, IPR003441
STRING	EOY21031	1e-137	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5527	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-112	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]