PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30954_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family DBB
Protein Properties Length: 209aa    MW: 22270.3 Da    PI: 6.2228
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30954_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.5e-07447542
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Neem_30954_f_1  4 QCNVCEAAEATVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47
                    7******99*********************66899999999986 PP
2zf-B_box28.33.7e-095395238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    +++kC+ ++e    +fC +++ llC++C +++H        H+
  Neem_30954_f_1 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnalvssHQ 95
                    789*******99*********************5456666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.495147IPR000315B-box-type zinc finger
CDDcd000215.90E-8347No hitNo description
PfamPF006431.7E-5447IPR000315B-box-type zinc finger
SMARTSM003366.2E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0155299IPR000315B-box-type zinc finger
SMARTSM003364.0E-155299IPR000315B-box-type zinc finger
PfamPF006437.4E-75395IPR000315B-box-type zinc finger
CDDcd000217.11E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKIQCNVCEA AEATVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS SMQMPKCDIC  60
QETSGFFFCL QDRALLCRKC DVAIHTANAL VSSHQRFLLT GVKVGLESAD PGASSSSVKS  120
LSAENISDTK SHSLAKRGTQ MPLAGEYTEV LPANPGGVGD FATTRVSFAG GSAAGSIPSW  180
HMDEFLGLPE LNQNYGFMDN GSSKRLAIF
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442350.11e-121B-box zinc finger protein 22
SwissprotQ9SYM21e-76BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV4U0941e-121V4U094_9ROSI; Uncharacterized protein
STRINGXP_006442350.11e-121(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.13e-77light-regulated zinc finger protein 1