PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3101_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 210aa    MW: 23111 Da    PI: 9.338
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3101_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-193079255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++ae+Aa+a++ a+++l+g
  Neem_3101_f_1 30 RYRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEDAARAYDTAARALRG 79
                   59*******.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-323087IPR001471AP2/ERF domain
PROSITE profilePS5103223.7883087IPR001471AP2/ERF domain
CDDcd000184.65E-313087No hitNo description
PfamPF008472.5E-123079IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-223089IPR016177DNA-binding domain
SMARTSM003802.9E-383093IPR001471AP2/ERF domain
PRINTSPR003677.8E-113142IPR001471AP2/ERF domain
PRINTSPR003677.8E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MRRGKSTAAT KPISPAAEEQ AGNGTSQEIR YRGVRKRPWG RFAAEIRDPL KKTRVWLGTF  60
DSAEDAARAY DTAARALRGP KAKTNFPFNC SSNLTRLRQR EAQEIRYSLS KFDPVQVNRP  120
TTSSMSSTVE SFSGPRLANP AAAIPRVQRK IVHPVSPDDC HSDCDSSSSV IDDGDDCVLS  180
SSFRKILPFD LNLPPPMAGV EDGDDLRLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-221994281Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00366DAPTransfer from AT3G20310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141662.19e-64hypothetical protein PHAVU_008G214700g
SwissprotQ9SXS85e-42ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0V0HV089e-68A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGXP_007141662.13e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.14e-29ethylene response factor 7