PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31072_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 152aa MW: 17120.5 Da PI: 10.7456

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31072_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	7.8e-12	15	62	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ l Neem_31072_f_1 15 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 62 8999*********************************99998777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-14	11	75	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.714	13	76	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.81E-12	15	69	No hit	No description
Pfam	PF00170	1.9E-10	15	59	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-14	15	67	No hit	No description
CDD	cd14703	5.21E-20	16	66	No hit	No description
PROSITE pattern	PS00036	0	18	33	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
QPPPASNSDT VIDPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTTLQT EVSALSPRVA 60 FLDHQRLVLN VDNSALKQRI AALAQDKIFK DAHQDALKKE IERLRQVYRQ QNLKKMNNNN 120 NAAPPLASAA PTQQPMNTDA IGCTDKDQQL LS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator. {ECO:0000269\|PubMed:17719007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002285311.2	9e-75	PREDICTED: basic leucine zipper 34
Swissprot	Q9M2K4	9e-64	BZP61_ARATH; Basic leucine zipper 61
TrEMBL	A5AUL2	4e-74	A5AUL2_VITVI; Uncharacterized protein
TrEMBL	E0CSC7	7e-74	E0CSC7_VITVI; Uncharacterized protein
STRING	VIT_19s0014g01780.t01	1e-74	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1753	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-64	bZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]